PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_101.15
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 164aa    MW: 18279.4 Da    PI: 9.0579
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_101.15genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.97.7e-2169120155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GVr+++ +g+++AeIrdp++ng  +r++lg++ tae+Aa a+++a+ k++g
  evm.model.supercontig_101.15  69 SNYRGVRRRP-WGKYAAEIRDPKKNG--ARVWLGTYETAEDAAVAYDQAAYKMRG 120
                                   57********.***********9998..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.72E-3069130No hitNo description
SuperFamilySSF541716.54E-2469129IPR016177DNA-binding domain
PfamPF008475.7E-1469120IPR001471AP2/ERF domain
PROSITE profilePS5103224.11870128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-3370129IPR001471AP2/ERF domain
SMARTSM003801.0E-3770134IPR001471AP2/ERF domain
PRINTSPR003678.5E-117182IPR001471AP2/ERF domain
PRINTSPR003678.5E-1194110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MGSDTWQSSD SALLESIRHH LLADDFEASV AAMLTNRTET INTGEIIKAE TSEDTGEMRD  60
IQGTLSKGSN YRGVRRRPWG KYAAEIRDPK KNGARVWLGT YETAEDAAVA YDQAAYKMRG  120
SKAKLNFPHL IGSCDYQPLR VSPKRRPTEP SSCLNDQDVK RRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A3e-3366135170ATERF1
2gcc_A3e-3366135170ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143162KRRPTEPSSCLNDQDVKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007052304.15e-54Ethylene-responsive element binding factor 13, putative
SwissprotQ8L9K16e-49ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A061DWK46e-54A0A061DWK4_THECC; Ethylene-responsive element binding factor 13, putative
STRINGPOPTR_0014s04640.12e-48(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-40ethylene-responsive element binding factor 13